Publications

Papers

Goscé L, GJ Abou Jaoude , DJ Kedziora , Benedikt C, Hussain A, Jarvis S, Skrahina A, Klimuk D, Hurevich H, Zhao F, Fraser-Hurt N, Cheikh N, Gorgens M, Wilson DJ, Abeysuriya R, Martin-Hughes R, Kelly SK, Roberts A, Stuart RM, Palmer T, Panovska-Griffiths J, Kerr CC, Wilson DP, H Haghparast-Bidgoli H, Skordis J, Abubakar I. Optima TB: A tool to help optimally allocate tuberculosis spending PLoS Comput Biol 17(9) Link

Kerr CC, Stuart RM, Mistry D, Abeysuriya RG, Rosenfeld K, Hart GR, Núñez RC, Cohen JA, Selvaraj P, Hagedorn B, George L, Jastrzębski M, Izzo AS, Fowler G, Palmer A, Delport D, Scott N, Kelly SL, Bennette CS, Wagner BG, Chang ST, Oron AP, Wnger EA, Panovska-Griffiths J, Famulare M, Klein DJ. Covasim: An agent-based model of COVID-19 dynamics and interventions PLoS Comput Biol 17(7) Link

Pham QD, Stuart RM, Nguyen TV, Luong QC, Tran QD, Pham TQ, Phan LT, Dang TQ, Tran DN, Do HT, Mistry D, Klein DJ, Abeysuriya RG, Oron AP, Kerr CC. Estimating and mitigating the risk of COVID-19 epidemic rebound associated with reopening of international borders in Vietnam: a modelling study Lancet Glob Health Link

Kerr CC, Mistry D, Stuart RM, Rosenfeld K, Hart GR, Núñez RC, Cohen JA, Selvaraj P, Abeysuriya RG, Jastrzębski M, George L, Hagedorn B, Panovska-Griffiths J, Fagalde M, Duchin J, Famulare M, Klein DJ. Controlling COVID-19 via test-trace-quarantine Nature Communications 12 Link

Stuart RM, Abeysuriya RG, Kerr CC, Mistry D, Klein DJ, Gray RT, Hellard M, Scott N. Role of masks, testing and contact tracing in preventing COVID-19 resurgences: a case study from New South Wales, Australia BMJ Open 11(4) Link

Scott N, Palmer A, Delport D, Abeysuriya R, Stuart RM, Kerr CC, Mistry D, Klein DJ, Sacks-Davis R, Heath K, Hainsworth SW, Pedrana A, Stoove M, Wilson D, Hellard ME. Modelling the impact of relaxing COVID-19 control measures during a period of low viral transmission Med. J. Aust., 214(2) Link

Stuart RM, Khan O, Abeysuriya R, Kryvchun T, Lysak V, Bredikhina A, Durdykulyieva N, Mykhailets V, Kaidashova E, Doroshenko O, Shubber Z, Wilson D, Zhao F, Fraser-Hurt N. Diabetes care cascade in Ukraine: an analysis of breakpoints and opportunities for improved diabetes outcomes BMC Health Services Research 20(1) Link

Becker R, Vidaurre D, Quinn AJ,Abeysuriya RG, Parker Jones O, Jbabdi S, Woolrich MW. Transient spectral events in resting state MEG predict individual task responses Neuroimage 215 Link

Kedziora DJ, Abeysuriya R, Kerr CC, Chadderdon GL, Harbuz VS, Metzger S, Wilson DP, Stuart RM. The Cascade Analysis Tool: software to analyze and optimize care cascades Gates Open Res. Link

Roberts JA, Gollo LL, Abeysuriya RG, Roberts G, Mitchell PB, Woolrich MW, Breakspear M. 2019. Metastable brain waves Nature Communications 10(1) Link

Tewarie P, Abeysuriya R, Byrne Á, O’Neill GC, Sotiropoulos SN, Broojes MJ, and Coombes S. 2019. How do spatially distinct frequency specific MEG networks emerge from one underlying structural connectome? The role of the structural eigenmodes Neuroimage 186 Link

Quinn AJ, Vidaurre D, Abeysuriya R, Becker R, Nobre AC, and Woolrich MW. 2018. Task-Evoked Dynamic Network Analysis Through Hidden Markov Modeling Front. Neurosci. 12 Link

Sanz-Leon P, Robinson PA, Knock SA, Drysdale PM, Abeysuriya RG, Fung PK, Rennie CJ, and Zhao X. 2018. NFTsim: theory and simulation of multiscale neural field dynamics PLoS Comp. Biol. 14(8) Link

Abeysuriya RG, Lockley SW, Robinson PA, and Postnova S. 2018. A unified model of melatonin, 6-sulfatoxymelatonin, and sleep dynamics J. Pineal Res. 64. Link

Hadida J, Sotiropoulos SN,Abeysuriya RG, Woolrich MW, and Jbabdi S. 2018. Bayesian Optimisation of Large-Scale Biophysical Networks NeuroImage 174. Link

Abeysuriya RG, Hadida J, Sotiropoulos SN, Jbabdi S, Becker R, Hunt BAE, Brookes MJ, and Woolrich MW. 2018. A biophysical model of dynamic balancing of excitation and inhibition in fast oscillatory large-scale networks PLoS Comp. Biol. 14 Link

Vidaurre D, Abeysuriya R, Becker R, Quinn AJ, Alfaro-Almagro F, Smith SM and Woolrich MW. 2017. Discovering dynamic brain networks from big data in rest and task NeuroImage (in press) Link

Abeysuriya RG and Robinson PA. 2015. Real-time automated EEG tracking of brain states using neural field theory. J. Neurosci. Meth. 258 Link

Abeysuriya RG, Rennie CJ, and Robinson PA. 2015. Physiologically-based arousal state estimation and dynamics. J. Neurosci. Meth. 253. Link

Abeysuriya RG, Rennie CJ, Robinson PA, and Kim JW. 2014. Experimental observation of a theoretically predicted nonlinear sleep spindle harmonic in human EEG. Clin. Neurophysiol. 125. Link

Abeysuriya RG, Rennie CJ, and Robinson PA. 2014. Prediction and verification of nonlinear sleep spindle harmonic oscillations. J. Theor. Biol. 344. Link

Kedziora DJ, Abeysuriya RG, Phillips AJK and Robinson PA. 2012. Physiologically based quantitative modeling of unihemispheric sleep. J. Theor. Biol. 314. Link

Postnova S, Robinson PA, Layden A, Phillips AJK, and Abeysuriya RG. 2012. Exploring Sleepiness and Entrainment on Permanent Shift Schedules in a Physiologically Based Model. J. Biol. Rhythms 27. Link

Phillips, AJK, Robinson PA, Kedziora DJ, and Abeysuriya RG. 2010. Mammalian sleep dynamics: How diverse features arise from a common physiological framework. PLoS Computational Biology 6(6): e1000826. Link

Hole MJ, Wilson HR, Abeysuriya R, and Larson JW. 2010. Ideal MHD Stability of a Spherical Tokamak Power Plant and a Component Test Facility. Plasma Physics and Controlled Fusion. 52. Link

Conference proceedings

Babaie T, Chawla S, and Abeysuriya R. 2014. Sleep Analytics and Online Selective Anomaly Detection. Proc. 20th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. Link

Book chapters

Kerr CC, Stuart RM, Kedziora DJ, Brown A, \textbf{Abeysuriya R}, Chadderdon GL, Nachesa A, Wilson DP. 2017. Optima HIV methodology and approach in Tackling the world’s fastest-growing HIV epidemic: Gateways to efficient and effective HIV responses in Eastern Europe and Central Asia (eds. Zhao F, Benedikt C, Wilson D), World Bank, Washington DC Link

Robinson PA, Postnova S, Abeysuriya RG, Kim JW, Roberts JA, McKenzie-Sell L, Karanjai A, Kerr CC, Fung F, Anderson R, Breakspear MJ, Drysdale PM, Fulcher BD, Phillips AJK, Rennie CJ, Yin G. 2015. A multiscale ‘Working Brain’ Model in Validating Computational Models in Neurological and Psychiatric Disorders (eds. Bhattacharya B, Chowdhury F), Springer, NY Link